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Genomics & Proteomics
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Ebola genomes sequenced

September 2, 2014 10:28 am | by Lisa Girard, Broad Institute Communication | News | Comments

Responding rapidly to the deadly outbreak of Ebola virus disease (EVD) in West Africa, a team of researchers from the Broad Institute and Harvard Univ., working with the Sierra Leone Ministry of Health and Sanitation and researchers elsewhere, has sequenced and analyzed many Ebola virus genomes. Their findings could have important implications for rapid field diagnostic tests.

Research hints at why stress is more devastating for some

September 2, 2014 9:52 am | by Rockefeller Univ. | News | Comments

Some people take stress in stride; others are done in by it. New research at Rockefeller Univ. has identified the molecular mechanisms of this so-called stress gap in mice with very similar genetic backgrounds—a finding that could lead researchers to better understand the development of psychiatric disorders such as anxiety and depression.

Surprising new role for calcium in sensing pain

September 2, 2014 7:53 am | by Karl Bates, Duke Univ. | News | Comments

When you accidentally touch a hot oven, you rapidly pull your hand away. Although scientists know the basic neural circuits involved in sensing and responding to such painful stimuli, they are still sorting out the molecular players. Duke Univ. researchers have made a surprising discovery about the role of a key molecule involved in pain in worms, and have built a structural model of the molecule.

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We travel with our own germs

August 29, 2014 5:24 am | by Lauran Neergaard - AP Medical Writer - Associated Press | News | Comments

Sorry, clean freaks. No matter how well you scrub your home, it's covered in bacteria from your own body. And if you pack up and move, new research shows, you'll rapidly transfer your unique microbial fingerprint to the doorknobs, countertops and floors in your new house, too.

Encyclopedia of how genomes function gets much bigger

August 28, 2014 9:07 am | News | Comments

A big step in understanding the human genome has been unveiled in the form of three analyses that provide the most detailed comparison yet of how the genomes of the fruit fly, roundworm, and human function. The research compares how the information encoded in the three species’ genomes is “read out,” and how their DNA and proteins are organized into chromosomes. The results add billions of entries to the archive of functional genomic data.

Water “thermostat” could help engineer drought-resistant crops

August 28, 2014 8:58 am | News | Comments

Duke Univ. researchers have identified a gene that could help scientists engineer drought-resistant crops. The gene, called OSCA1, encodes a protein in the cell membrane of plants that senses changes in water availability and adjusts the plant’s water conservation machinery accordingly. The effect is similar to a thermostat.

Neuroscientists reverse memories’ emotional associations

August 28, 2014 8:27 am | by Anne Trafton, MIT News Office | News | Comments

Most memories have some kind of emotion associated with them. A new study from Massachusetts Institute of Technology neuroscientists reveals the brain circuit that controls how memories become linked with positive or negative emotions. Furthermore, the researchers found that they could reverse the emotional association of specific memories by manipulating brain cells with optogenetics.

Researchers discover why Listeria bacterium is so hard to fight

August 27, 2014 11:11 am | News | Comments

The harmful and potentially deadly bacterium Listeria is extremely good at adapting to changes. Research from Denmark uncovers exactly how cunning Listeria is and why it is so hard to fight. The discovery could help develop more efficient ways to combat the bacteria.

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Sorting cells with sound waves

August 26, 2014 7:36 am | by Anne Trafton, MIT News Office | Videos | Comments

Researchers have devised a new way to separate cells by exposing them to sound waves as they flow through a tiny channel. Their device, about the size of a dime, could be used to detect the extremely rare tumor cells that circulate in cancer patients’ blood, helping doctors predict whether a tumor is going to spread.

A surprising new role for natural killer T cells

August 25, 2014 9:25 am | News | Comments

In the past, immune cells were clearly divided into innate cells, which respond to attacks in a non-specific way, and adaptive cells, which learn to recognize new antigens and gain the ability to rapidly react to later attacks. Researchers at RIKEN in Japan have discovered that is not always the case, having found that killer T cells previously thought to be innate, and thus short-lived, can remain in the lung for up to nine months.

Efficient Bioengineering

August 22, 2014 2:50 pm | Award Winners

Lawrence Berkeley National Laboratory’s Tissue-Specific Cell-Wall Engineering is a powerful new method for rapidly transforming crops into biological factories. The technology, a suite of high-precision genetic tools and procedures, makes it possible to change plant traits in a highly selective, tissue-specific fashion.

A Closer Look at 3-D Cell Cultures

August 22, 2014 2:14 pm | Award Winners

It’s well known that compared with 2-D cell culture models, 3-D cell culture models have different patterns of development, respond differently to therapeutic targets and have different patterns of gene expression. Lawrence Berkeley National Laboratory’s BioSig3D is the only computational platform that provides Web-based delivery of image-based bioinformatics technology from 3-D cell culture models that are imaged in full 3-D using either confocal or deconvolution microscopy.

Faster Peptide Synthesis

August 21, 2014 11:07 am | CEM Corporation | Award Winners

Peptide and protein therapeutics are important drug candidates due to their ubiquitous nature as biological molecules, as well as their ability to control all aspects of cellular function along with many facets of intercellular communication. CEM Corp.’s Liberty Blue automated microwave peptide synthesizer will streamline the peptide synthesis process for pharmaceutical, biotech and academic researchers, enabling them to produce peptides for drug discovery and studies in the field of life sciences in a manner that is more efficient, cost effective, faster and better for the environment.

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Researchers develop models to study polyelectrolytes

August 21, 2014 9:04 am | by Matt Shipman, News Services, North Carolina State Univ. | Videos | Comments

Researchers from North Carolina State Univ. have developed a novel and versatile modeling strategy to simulate polyelectrolyte systems. The model has applications for creating new materials as well as for studying polyelectrolytes, including DNA and RNA. Polyelectrolytes are chains of molecules that are positively or negatively charged when placed in water.

Programmed to fold: RNA origami

August 21, 2014 8:27 am | by Katie Neith, California Institute of Technology | News | Comments

Researchers from Aarhus Univ. and Caltech have developed a new method for organizing molecules on the nanoscale. Inspired by techniques used for folding DNA origami, the team fabricated complicated shapes from DNA's close chemical cousin, RNA. Unlike DNA origami, whose components are chemically synthesized and then folded in an artificial heating and cooling process, RNA origami are enzymatically synthesized.

Treating pain by blocking the chili-pepper receptor

August 21, 2014 8:00 am | by American Chemical Society | News | Comments

As anyone who has bitten into a chili pepper knows, its burning spiciness—though irresistible to some—is intolerable to others. Scientists exploring the chili pepper’s effect are using their findings to develop a new drug candidate for many kinds of pain, which can be caused by inflammation or other problems. They reported their progress on the compound, which is being tested in clinical trials, in the Journal of Medicinal Chemistry.

Biomarker in aggressive breast cancer identified

August 20, 2014 7:53 am | by Megan Fellman, Northwestern Univ. | News | Comments

Two Northwestern Univ. scientists have identified a biomarker strongly associated with basal-like breast cancer, a highly aggressive carcinoma that is resistant to many types of chemotherapy. The biomarker, a protein called STAT3, provides a smart target for new therapeutics designed to treat this often deadly cancer.

500-million-year reset for the immune system

August 19, 2014 10:22 am | News | Comments

Scientists at the Max Planck Institute of Immunobiology and Epigenetics re-activated expression of an ancient gene, which is not normally expressed in the mammalian immune system, and found that the animals developed a fish-like thymus. To the researchers' surprise, while the mammalian thymus is utilized exclusively for T cell maturation, the reset thymus produced not only T cells, but also served as a maturation site for B cells.

Bacterial nanowires not what scientists thought they were

August 19, 2014 8:28 am | by Robert Perkins, Univ. of Southern California | Videos | Comments

For the past 10 years, scientists have been fascinated by a type of “electric bacteria” that shoots out long tendrils like electric wires, using them to power themselves and transfer electricity to a variety of solid surfaces. A team led by scientists has now turned the study of these bacterial nanowires on its head, discovering that the key features in question are not pili as previously believed.

Worm virus details come to light

August 19, 2014 8:10 am | by Mike Williams, Rice Univ. | News | Comments

Rice Univ. scientists have won a race to find the crystal structure of the first virus known to infect the most abundant animal on Earth. The Rice laboratories of structural biologist Yizhi Jane Tao and geneticist Weiwei Zhong, with help from researchers at Baylor College of Medicine and Washington Univ., analyzed the Orsay virus that naturally infects a certain type of nematode, the worms that make up 80% of the living animal population.

Engineering new bone growth

August 19, 2014 7:56 am | by Anne Trafton, MIT News Office | News | Comments

Massachusetts Institute of Technology chemical engineers have devised a new implantable tissue scaffold coated with bone growth factors that are released slowly over a few weeks. When applied to bone injuries or defects, this coated scaffold induces the body to rapidly form new bone that looks and behaves just like the original tissue.

Microchip reveals how tumor cells transition to invasion

August 18, 2014 11:06 am | by Kevin Stacey, Brown Univ. | News | Comments

Using a microengineered device that acts as an obstacle course for cells, researchers have shed new light on a cellular metamorphosis thought to play a role in tumor cell invasion throughout the body. The epithelial-mesenchymal transition (EMT) is a process in which epithelial cells, which tend to stick together within a tissue, change into mesenchymal cells, which can disperse and migrate individually.

Artificial cells act like the real thing

August 18, 2014 10:55 am | News | Comments

Imitation, they say, is the sincerest form of flattery, but mimicking the intricate networks and dynamic interactions that are inherent to living cells is difficult to achieve outside the cell. Now, as published in Science, Weizmann Institute scientists have created an artificial, network-like cell system that is capable of reproducing the dynamic behavior of protein synthesis.

New way to treat solid tumors

August 15, 2014 11:12 am | News | Comments

An international team of scientists has shown that an antibody against the protein EphA3, found in the micro-environment of solid cancers, has anti-tumor effects. As EphA3 is present in normal organs only during embryonic development but is expressed in blood cancers and in solid tumors, this antibody-based approach may be a suitable candidate treatment for solid tumors.

New gene editing method may help correct muscular dystrophy

August 15, 2014 8:56 am | News | Comments

Researchers in Texas have successfully used a new gene editing method to correct a mutation that leads to Duchenne muscular dystrophy (DMD) in a mouse model of the condition. The technique is called CRISPR/Cas9-mediated genome editing, and can precisely remove a mutation in DNA, allowing the body’s DNA repair mechanisms to replace it with a normal copy of the gene.

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