Big data can mean big headaches for scientists. A new library of software tools from Howard Hughes Medical Institute’s Janelia Research Campus speeds analysis of data sets so large and complex they would take days or weeks to analyze on a single workstation, even if a single workstation could do it at all. The new tool, Thunder, should help interpret data that holds new insights into how the brain works.
It’s an all-too familiar scenario for many people. You sprain your ankle or twist your knee. If you’re an adult, the initial pain is followed by a long road of recovery, with no promise that the torn ligament or tendon will ever regain its full strength. That’s because tendon and ligament cells in adults produce little collagen, the fibrous protein that is used to build new tendon and ligament tissue.
Virologists and biologists in California have identified a highly abundant, never-before-described virus that could play a major role in obesity, diabetes. The virus, named crAssphage, has about 10 times as many base pairs of DNA as HIV and infects one of the most common types of gut bacteria. This phylum of bacteria is thought to be connected with obesity, diabetes and other gut-related diseases.
A new study has shown that it is possible to predict long-term cancer risk from a chemical exposure by measuring the short-term effects of that same exposure. The findings could make it possible to develop simpler and cheaper tests to screen chemicals for their potential cancer causing risk.
According to recently published research, scientists in the U.K. say that just 8.2% of human DNA is likely to be doing something important, or “functional”. This figure is very different from one given in 2012, when some scientists involved in the ENCODE (Encyclopedia of DNA Elements) project stated that 80% of our genome has some biochemical function.
The primordial soup theory suggests that life began in a pond or ocean as a result of the combination of metals, gases from the atmosphere and some form of energy, such as a lightning strike, to make the building blocks of proteins which would then evolve into all species. New research shows how mitochondria in cells continue to perform similar reactions in our bodies today.
Stanford Univ. biology Prof. Rodolfo Dirzo and his colleagues are warning that "defaunation" could have harmful downstream effects on human health. The planet's current biodiversity, the product of 3.5 billion years of evolutionary trial and error, is the highest in the history of life. But, Dirzo says, this may be reaching a tipping point.
Actin is the most abundant protein in the body, and is the basis of most movement in the body. Adding to the growing fundamental understanding of the machinery of muscle cells, a group of biophysicists in Pennsylvania have published work that describes in minute detail how actin filaments are stabilized at one of their ends to form a basic muscle structure called the sarcomere.
Around 75% of the supposed functionless DNA in the human genome is transcribed into so-called non-coding RNAs, and little is known about their function. Now, researchers have demonstrated that the production of non-coding RNAs is precisely regulated. They suspect that non-coding RNAs might play a role in regulating cellular processes or in the modified immune response following exposure to environmental toxicants.
New research from North Carolina State Univ. shows that urban “heat islands” are slowly killing red maples in the southeastern U.S. One factor is that researchers have found warmer temperatures increase the number of young produced by the gloomy scale insect—a significant tree pest—by 300%, which in turn leads to 200 times more adult gloomy scales on urban trees.
More than a decade ago, news of a Namibian desert beetle’s efficient water collection system inspired engineers to try and reproduce these surfaces in the laboratory. Small-scale advances in fluid physics, materials engineering and nanoscience since that time have brought them close to succeeding. And their work could have impact on a wide range of industries at the macroscale.
The drought that has the entire country in its grip is affecting more than the color of people’s lawns. It may also be responsible for the proliferation of a heat-loving amoeba commonly found in warm freshwater bodies, such as lakes, rivers and hot springs, which the drought has made warmer than usual this year.
Spinach gave Popeye super strength, but it also holds the promise of a different power for a group of scientists: the ability to convert sunlight into a clean, efficient alternative fuel. Purdue Univ. physicists are part of an international group using spinach to study the proteins involved in photosynthesis, the process by which plants convert the sun’s energy into carbohydrates used to power cellular processes.
More than 100 researchers from around the world have collaborated in the biggest-ever genomic mapping of schizophrenia, for which scientists had previously uncovered only about a couple of dozen risk-related genes. Since this research began, scientists have linked more than 100 spots in our DNA to the risk of developing schizophrenia, casting light on the mystery of what makes the disease tick.
A research team from NIST, working with the Cleveland Clinic, has demonstrated a dramatically improved technique for analyzing biological cells and tissues based on characteristic molecular vibration "signatures." The new NIST technique is an advanced form of the widely used spontaneous Raman spectroscopy, but one that delivers signals that are 10,000 times stronger than obtained from spontaneous Raman scattering.
Scientists attached radio-frequency identification (RFID) tags to hundreds of individual honey bees and tracked them for several weeks. The effort yielded two discoveries: Some foraging bees are much busier than others; and if those busy bees disappear, others will take their place.
A special class of tiny gold particles can easily slip through cell membranes, making them good candidates to deliver drugs directly to target cells. A new study from Massachusetts Institute of Technology materials scientists reveals that these nanoparticles enter cells by taking advantage of a route normally used in vesicle-vesicle fusion, a crucial process that allows signal transmission between neurons.
Janelia Research Campus experts have built a new computational method that can essentially automate much of the time-consuming process of reconstructing an animal's developmental building plan cell by cell. Using image data obtaining using a sophisticated form of light sheet microscopy, the tool can track the movement of cells in an animal’s body in 3-D.
In the U.K., researchers have revealed the structure of one of the most important and complicated proteins in cell division, the anaphase-promoting complex. Electron microscopy and software has produced images of the gigantic protein in unprecedented detail and could transform scientists' understanding of exactly how cells copy their chromosomes and divide. It could also reveal binding sites for future cancer drugs.
HIV-infected people carry many different HIV viruses and all have distinct personalities—some much more vengeful and infectious than others. Yet, despite the breadth of infectivity, roughly 76% of HIV infections arise from a single virus. Now, scientists believe they can identify the culprit with very specific measurements of the quantities of a key protein in the HIV virus.
The rate of HIV infections diagnosed in the U.S. each year fell by one-third over the past decade, a government study finds. Experts celebrated it as hopeful news that the AIDS epidemic may be slowing in the U.S. The reasons for the drop aren't clear. It might mean fewer new infections are occurring. Or that most infected people already have been diagnosed so more testing won't necessarily find many more cases.
“Big data” has yet to make a mark on conservation efforts to preserve the planet’s biodiversity. But that may soon change with a new model developed by Univ. of California, Berkeley, biologist Brent Mishler and his colleagues in Australia. This effort leverages the growing mass of data to take into account not only the number of species throughout an area, but also the variation among species and their geographic rarity, or endemism.
Most current methods of identifying intracellular information result in the death of the individual cells, making it impossible to continue to gain information and assess change over time. Using magnetized carbon nanotubes, scientists in Texas have devised a new method for extracting molecules from live cells without disrupting cell development.
Barnacle glue, or cement, sticks to any surface, under any conditions. And it’s still far better than anything we have been able to develop synthetically. Now, over 150 years since it was first described by Charles Darwin, scientists are finally uncovering the secrets behind the super strength of barnacle glue.
Yale School of Medicine and Yale Cancer Center researchers have uncovered a genetic vulnerability of cancer cells that express telomerase and showed that telomerase-expressing cells depend upon a gene named p21 for their survival. Authors found that simultaneous inhibition of both telomerase and p21 inhibited tumor growth in mice.